Jun
7
Detecting U12-type introns using IntEREst R/Biocondcutor package
Ali Oghabian
2019-04-25
The topics covered in this post are:
R and IntEREst version Files in the zip Annotating u12 type introns of HG38 ncRNAs with U12-type introns U12 annotation comparison Reference Files in the zip
You can download the zip file the includes all the scripts and R objects from here. The files in the zip/folder include:
annoFil.rda R object file. A data frame that includes various annotations and information for the latest ENSEMBL genes (GRCh38.p12). AllU12Introns.tsv Tab separated text file. Includes the detecetd U12-type introns and their annotations. ens38UncolMod.rda ENSEMBL reference that includes gene and transcript IDs together with coordinates of the introns and exons. ensHg38UncolFilpaste60AnnoMat_40_don07_bp14.rda R object file.
2019-04-25
The topics covered in this post are:
R and IntEREst version Files in the zip Annotating u12 type introns of HG38 ncRNAs with U12-type introns U12 annotation comparison Reference Files in the zip
You can download the zip file the includes all the scripts and R objects from here. The files in the zip/folder include:
annoFil.rda R object file. A data frame that includes various annotations and information for the latest ENSEMBL genes (GRCh38.p12). AllU12Introns.tsv Tab separated text file. Includes the detecetd U12-type introns and their annotations. ens38UncolMod.rda ENSEMBL reference that includes gene and transcript IDs together with coordinates of the introns and exons. ensHg38UncolFilpaste60AnnoMat_40_don07_bp14.rda R object file.